# Example input file for the AssemblyMapper.pl program. # # Using this file: # # ./AssemblyMapper.pl -s human -f assemblymapper.in # # Expected output (for Ensembl release 57): # # # chromosome:NCBI34:7:490000:500000:1 # chromosome:NCBI34:7:490000:491083:1,chromosome:GRCh37:7:744919:746002:1 # chromosome:NCBI34:7:491084:491139:1,chromosome:GRCh37:7:746004:746059:1 # chromosome:NCBI34:7:491151:491313:1,chromosome:GRCh37:7:746060:746222:1 # chromosome:NCBI34:7:491316:493838:1,chromosome:GRCh37:7:746223:748745:1 # chromosome:NCBI34:7:493839:494098:1,chromosome:GRCh37:7:748749:749008:1 # chromosome:NCBI34:7:494099:500000:1,chromosome:GRCh37:7:749010:754911:1 # # # chromosome:NCBI35:7:490000:500000:1 # chromosome:NCBI35:7:490000:498925:1,chromosome:GRCh37:7:715996:724921:1 # chromosome:NCBI35:7:498926:499002:1,chromosome:GRCh37:7:724946:725022:1 # chromosome:NCBI35:7:499007:500000:1,chromosome:GRCh37:7:725023:726016:1 # # # chromosome:NCBI36:7:490000:500000:1 # chromosome:NCBI36:7:490000:500000:1,chromosome:GRCh37:7:523474:533474:1 # # # chromosome:GRCh37:7:490000:500000:1 # chromosome:GRCh37:7:490000:500000:1,chromosome:GRCh37:7:490000:500000:1 :NCBI34:7:490000:500000: # a slice on chromosome 7 on the NCBI34 assembly :NCBI35:7:490000:500000: # a slice on the NCBI35 assembly :NCBI36:7:490000:500000: # etc. :GRCh37:7:490000:500000: