************************************************* * PROSITE protein families and domains database * ************************************************* FTP site: Organization SIB Swiss Institute of Bioinformatics Address FTP: https://ftp.expasy.org Directory /databases/prosite This directory contains the following subdirectories: +-prosite--+ updated version of the PROSITE release (updated roughly | every month); this is the same version as the one | that can be queried through https://prosite.expasy.org. | | | |--old_releases gzipped 'tar' (archive) files of previous releases of PROSITE. | Each release is stored in a file with the name: prositeXX_X.tar.gz | where "XX_X" is the release number. Each release file contains | prosite.doc, prosite.dat and since release 20.0 prorule.dat. | |--ps_scan Perl program used to scan one or several patterns, rules and/or profiles | from PROSITE against one or several protein sequences. Requires 'pfscan' | and psa2msa from the pftools package. | | Directory /databases/prosite File/Folder name Description ---------------- ---------------------------------------------------------------------- README This document README.license url to PROSITE license conditions document README.pftools url to the pftools (collection of programs supporting the generalized profile format and search method of PROSITE) README.prosuser url to PROSITE user manual document _COPYRIGHT_NOTICE_ PROSITE copyright notice evaluator.dat Miniprofiles data file (all profiles used to evaluate pattern matches) jourlist.txt List of abbreviations for journals cited in prosite.doc old_releases Contains, for each former release of PROSITE, prosite.dat, prodoc.dat and prorule.dat if it existed at the time (release 20.0 and thereafer) profile.txt Syntax for PROSITE profiles prorule.dat PROSITE ProRule file (all rules) prosite.dat PROSITE data file (all patterns and profiles) prosite.doc PROSITE documentation file (all documentation entries) prosite.lis List of documentation entries prosite_alignments.tar.gz Alignment of all UniProtKB/Swiss-Prot true positive hits for each pattern or profile entry prosite_alignments_for_logos.tar.gz Alignment of all UniProtKB/Swiss-Prot true positive hits for each pattern or profile entry, same as the ones contained in prosite_alignments.tar.gz but without any insertion. ps_reldt.txt Current PROSITE release number and date ps_scan Perl program used to scan one or several patterns, rules and/or profiles from PROSITE against one or several protein sequences psdelac.txt List of all entries accession numbers that have been deleted from prosite.dat or prosite.doc sequence_logos.tar.gz Logo for each alignment present in prosite_alignments.tar.gz unirule.pdf Syntax for the rules in ProRule -------------------------------------------------------------------------------- PROSITE is copyrighted by the SIB Swiss Institute of Bioinformatics and distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives (CC BY-NC-ND 4.0) License, see https://prosite.expasy.org/prosite_license.html --------------------------------------------------------------------------------