[DIR] Parent Directory

This directory contains data generated by the Myers/HudsonAlpha lab as part of the ENCODE project. Further information is available in the HudsonAlpha RnaSeq track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.


RESTRICTED
until
  FileSizeSubmitted  Details
  2010-10-06wgEncodeHudsonalphaRnaSeqRPKMRep1A549CellPapErng3R1x36Dexa.bed12.gz  1.9M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=DEX_100nM; replicate=1; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL330; softwareVersion=MACS; mapAlgorithm=erng3; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep1A549CellPapErng3R1x36Dexa; readType=1x36
  2010-10-06wgEncodeHudsonalphaRnaSeqAlignsRep1A549CellPapErng3R1x36Dexa.tagAlign.gz  135M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=DEX_100nM; replicate=1; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL330; mapAlgorithm=erng3; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep1A549CellPapErng3R1x36Dexa; readType=1x36
  2010-10-06wgEncodeHudsonalphaRnaSeqRPKMRep2A549CellPapErng3R1x36Dexa.bed12.gz  1.9M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=DEX_100nM; replicate=2; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL332; softwareVersion=MACS; mapAlgorithm=erng3; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep2A549CellPapErng3R1x36Dexa; readType=1x36
  2010-10-06wgEncodeHudsonalphaRnaSeqAlignsRep2A549CellPapErng3R1x36Dexa.tagAlign.gz  140M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=DEX_100nM; replicate=2; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL332; mapAlgorithm=erng3; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep2A549CellPapErng3R1x36Dexa; readType=1x36
  2010-10-06wgEncodeHudsonalphaRnaSeqAlignsRep1A549CellPapErng3R1x36Etoh02.tagAlign.gz  127M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=EtOH_0.02pct; replicate=1; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL331 (Control); mapAlgorithm=erng3; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep1A549CellPapErng3R1x36Etoh02; readType=1x36
  2010-10-06wgEncodeHudsonalphaRnaSeqRPKMRep1A549CellPapErng3R1x36Etoh02.bed12.gz  1.9M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=EtOH_0.02pct; replicate=1; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL331 (Control); mapAlgorithm=erng3; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep1A549CellPapErng3R1x36Etoh02; readType=1x36
  2010-10-06wgEncodeHudsonalphaRnaSeqAlignsRep2A549CellPapErng3R1x36Etoh02.tagAlign.gz  133M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=EtOH_0.02pct; replicate=2; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL333 (Control); mapAlgorithm=erng3; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep2A549CellPapErng3R1x36Etoh02; readType=1x36
  2010-10-06wgEncodeHudsonalphaRnaSeqRPKMRep2A549CellPapErng3R1x36Etoh02.bed12.gz  1.9M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=EtOH_0.02pct; replicate=2; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL333 (Control); mapAlgorithm=erng3; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep2A549CellPapErng3R1x36Etoh02; readType=1x36
  2010-10-15wgEncodeHudsonalphaRnaSeqAlignsRep1JurkatCellPapBow10R1x25.tagAlign.gz  106M  2010-01-16  dataType=RnaSeq; cell=Jurkat; rnaExtract=longPolyA; localization=cell; treatment=None; replicate=1; subId=1084; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL316; mapAlgorithm=bow10; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep1JurkatCellPapBow10R1x25; readType=1x25
  2010-10-15wgEncodeHudsonalphaRnaSeqRPKMRep1JurkatCellPapBow10R1x25.bed12.gz  1.9M  2010-01-16  dataType=RnaSeq; cell=Jurkat; rnaExtract=longPolyA; localization=cell; treatment=None; replicate=1; subId=1084; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL316; mapAlgorithm=bow10; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep1JurkatCellPapBow10R1x25; readType=1x25
  2010-10-15wgEncodeHudsonalphaRnaSeqAlignsRep2JurkatCellPapBow10R1x25.tagAlign.gz  92M  2010-01-16  dataType=RnaSeq; cell=Jurkat; rnaExtract=longPolyA; localization=cell; treatment=None; replicate=2; subId=1084; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL317; mapAlgorithm=bow10; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep2JurkatCellPapBow10R1x25; readType=1x25
  2010-10-15wgEncodeHudsonalphaRnaSeqRPKMRep2JurkatCellPapBow10R1x25.bed12.gz  1.9M  2010-01-16  dataType=RnaSeq; cell=Jurkat; rnaExtract=longPolyA; localization=cell; treatment=None; replicate=2; subId=1084; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL317; mapAlgorithm=bow10; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep2JurkatCellPapBow10R1x25; readType=1x25

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