[DIR] Parent Directory

This directory contains data generated by the Gingeras/Cshl lab as part of the ENCODE project. Further information is available in the /cgi-bin/hgTrackUi?db=hg18&g=wgEncodeCshlShortRnaSeq"> CSHL Sm RNA-seq track description.

There are two files within this directory that contain information about the downloads:
  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.

    • Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

    RESTRICTED
    until    		  FileSizeSubmitted  Details
      2010-10-14wgEncodeCshlShortRnaSeqAlignmentsGm12878CellShort.tagAlign.gz  29M  2010-01-14  cell=GM12878; dataType=RnaSeq; rnaExtract=short; localization=cell; lab=Cshl; type=bigBed; view=Alignments; subId=1017; grant=Gingeras; dataVersion=ENCODE Jan 2010 Freeze; tableName=wgEncodeCshlShortRnaSeqAlignmentsGm12878CellShort
      2010-10-14wgEncodeCshlShortRnaSeqRawDataGm12878CellShort.fastq.gz  1.9G  2010-01-14  cell=GM12878; dataType=RnaSeq; rnaExtract=short; localization=cell; lab=Cshl; type=fastq; view=RawData; subId=1017; grant=Gingeras; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-14wgEncodeCshlShortRnaSeqTransfragsGm12878CellShort.broadPeak.gz  7.0M  2010-01-14  cell=GM12878; dataType=ShortRnaSeq; rnaExtract=short; localization=cell; lab=Cshl; type=broadPeak; view=Transfrags; subId=1056; grant=Gingeras; dataVersion=ENCODE Jan 2010 Freeze; tableName=wgEncodeCshlShortRnaSeqTransfragsGm12878CellShort
      2010-06-23wgEncodeCshlShortRnaSeqAlignmentsGm12878CytosolShort.tagAlign.gz  24M  2009-09-23  cell=GM12878; dataType=ShortRnaSeq; rnaExtract=short; localization=cytosol; lab=Cshl; type=bigBed; view=Alignments; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqAlignmentsGm12878CytosolShort
      2010-06-23wgEncodeCshlShortRnaSeqTransfragsGm12878CytosolShort.broadPeak.gz  14M  2009-09-23  cell=GM12878; dataType=ShortRnaSeq; rnaExtract=short; localization=cytosol; lab=Cshl; type=broadPeak; view=Transfrags; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqTransfragsGm12878CytosolShort
      2010-06-23wgEncodeCshlShortRnaSeqRawDataGm12878CytosolShort.fastq.gz  1009M  2009-09-23  cell=GM12878; dataType=ShortRnaSeq; rnaExtract=short; localization=cytosol; lab=Cshl; type=fastq; view=RawData; subId=535; grant=Gingeras; dataVersion=ENCODE Fall 2009 Freeze
      2010-06-23wgEncodeCshlShortRnaSeqAlignmentsGm12878NucleusShort.tagAlign.gz  17M  2009-09-23  cell=GM12878; dataType=ShortRnaSeq; rnaExtract=short; localization=nucleus; lab=Cshl; type=bigBed; view=Alignments; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqAlignmentsGm12878NucleusShort
      2010-06-23wgEncodeCshlShortRnaSeqTransfragsGm12878NucleusShort.broadPeak.gz  5.3M  2009-09-23  cell=GM12878; dataType=ShortRnaSeq; rnaExtract=short; localization=nucleus; lab=Cshl; type=broadPeak; view=Transfrags; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqTransfragsGm12878NucleusShort
      2010-06-23wgEncodeCshlShortRnaSeqRawDataGm12878NucleusShort.fastq.gz  1.3G  2009-09-23  cell=GM12878; dataType=ShortRnaSeq; rnaExtract=short; localization=nucleus; lab=Cshl; type=fastq; view=RawData; subId=535; grant=Gingeras; dataVersion=ENCODE Fall 2009 Freeze
      2010-10-14wgEncodeCshlShortRnaSeqAlignmentsK562CellShort.tagAlign.gz  20M  2010-01-14  cell=K562; dataType=RnaSeq; rnaExtract=short; localization=cell; lab=Cshl; type=bigBed; view=Alignments; subId=1000; grant=Gingeras; dataVersion=ENCODE Jan 2010 Freeze; tableName=wgEncodeCshlShortRnaSeqAlignmentsK562CellShort
      2010-10-14wgEncodeCshlShortRnaSeqRawDataK562CellShort.fastq.gz  1.9G  2010-01-14  cell=K562; dataType=RnaSeq; rnaExtract=short; localization=cell; lab=Cshl; type=fastq; view=RawData; subId=1000; grant=Gingeras; dataVersion=ENCODE Jan 2010 Freeze
      2010-10-14wgEncodeCshlShortRnaSeqTransfragsK562CellShort.broadPeak.gz  5.7M  2010-01-14  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=cell; lab=Cshl; type=broadPeak; view=Transfrags; subId=1056; grant=Gingeras; dataVersion=ENCODE Jan 2010 Freeze; tableName=wgEncodeCshlShortRnaSeqTransfragsK562CellShort
      2010-06-23wgEncodeCshlShortRnaSeqAlignmentsK562ChromatinShort.tagAlign.gz  110M  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=chromatin; lab=Cshl; type=bigBed; view=Alignments; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqAlignmentsK562ChromatinShort
      2010-06-23wgEncodeCshlShortRnaSeqTransfragsK562ChromatinShort.broadPeak.gz  57M  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=chromatin; lab=Cshl; type=broadPeak; view=Transfrags; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqTransfragsK562ChromatinShort
      2010-06-23wgEncodeCshlShortRnaSeqRawDataK562ChromatinShort.fastq.gz  1.7G  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=chromatin; lab=Cshl; type=fastq; view=RawData; subId=535; grant=Gingeras; dataVersion=ENCODE Fall 2009 Freeze
      2010-06-23wgEncodeCshlShortRnaSeqAlignmentsK562CytosolShort.tagAlign.gz  23M  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=cytosol; lab=Cshl; type=bigBed; view=Alignments; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqAlignmentsK562CytosolShort
      2010-06-23wgEncodeCshlShortRnaSeqTransfragsK562CytosolShort.broadPeak.gz  13M  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=cytosol; lab=Cshl; type=broadPeak; view=Transfrags; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqTransfragsK562CytosolShort
      2010-06-23wgEncodeCshlShortRnaSeqRawDataK562CytosolShort.fastq.gz  905M  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=cytosol; lab=Cshl; type=fastq; view=RawData; subId=535; grant=Gingeras; dataVersion=ENCODE Fall 2009 Freeze
      2010-06-23wgEncodeCshlShortRnaSeqAlignmentsK562NucleolusShort.tagAlign.gz  28M  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=nucleolus; lab=Cshl; type=bigBed; view=Alignments; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqAlignmentsK562NucleolusShort
      2010-06-23wgEncodeCshlShortRnaSeqTransfragsK562NucleolusShort.broadPeak.gz  15M  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=nucleolus; lab=Cshl; type=broadPeak; view=Transfrags; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqTransfragsK562NucleolusShort
      2010-06-23wgEncodeCshlShortRnaSeqRawDataK562NucleolusShort.fastq.gz  1.1G  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=nucleolus; lab=Cshl; type=fastq; view=RawData; subId=535; grant=Gingeras; dataVersion=ENCODE Fall 2009 Freeze
      2010-06-23wgEncodeCshlShortRnaSeqAlignmentsK562NucleoplasmShort.tagAlign.gz  337M  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=nucleoplasm; lab=Cshl; type=bigBed; view=Alignments; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqAlignmentsK562NucleoplasmShort
      2010-06-23wgEncodeCshlShortRnaSeqTransfragsK562NucleoplasmShort.broadPeak.gz  214M  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=nucleoplasm; lab=Cshl; type=broadPeak; view=Transfrags; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqTransfragsK562NucleoplasmShort
      2010-06-23wgEncodeCshlShortRnaSeqRawDataK562NucleoplasmShort.fastq.gz  1.9G  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=nucleoplasm; lab=Cshl; type=fastq; view=RawData; subId=535; grant=Gingeras; dataVersion=ENCODE Fall 2009 Freeze
      2010-06-23wgEncodeCshlShortRnaSeqAlignmentsK562NucleusShort.tagAlign.gz  11M  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=nucleus; lab=Cshl; type=bigBed; view=Alignments; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqAlignmentsK562NucleusShort
      2010-06-23wgEncodeCshlShortRnaSeqTransfragsK562NucleusShort.broadPeak.gz  4.7M  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=nucleus; lab=Cshl; type=broadPeak; view=Transfrags; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqTransfragsK562NucleusShort
      2010-06-23wgEncodeCshlShortRnaSeqRawDataK562NucleusShort.fastq.gz  391M  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=nucleus; lab=Cshl; type=fastq; view=RawData; subId=535; grant=Gingeras; dataVersion=ENCODE Fall 2009 Freeze
      2010-06-23wgEncodeCshlShortRnaSeqAlignmentsK562PolysomeShort.tagAlign.gz  3.2M  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=polysome; lab=Cshl; type=bigBed; view=Alignments; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqAlignmentsK562PolysomeShort
      2010-06-23wgEncodeCshlShortRnaSeqTransfragsK562PolysomeShort.broadPeak.gz  1.8M  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=polysome; lab=Cshl; type=broadPeak; view=Transfrags; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqTransfragsK562PolysomeShort
      2010-06-23wgEncodeCshlShortRnaSeqRawDataK562PolysomeShort.fastq.gz  297M  2009-09-23  cell=K562; dataType=ShortRnaSeq; rnaExtract=short; localization=polysome; lab=Cshl; type=fastq; view=RawData; subId=535; grant=Gingeras; dataVersion=ENCODE Fall 2009 Freeze
      2010-06-23wgEncodeCshlShortRnaSeqAlignmentsProstateCellShort.tagAlign.gz  31M  2009-09-23  cell=prostate; dataType=ShortRnaSeq; rnaExtract=short; localization=cell; lab=Cshl; type=bigBed; view=Alignments; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqAlignmentsProstateCellShort
      2010-06-23wgEncodeCshlShortRnaSeqTransfragsProstateCellShort.broadPeak.gz  14M  2009-09-23  cell=prostate; dataType=ShortRnaSeq; rnaExtract=short; localization=cell; lab=Cshl; type=broadPeak; view=Transfrags; subId=535; grant=Gingeras; dataVersion=ENCODE Sep 2009 Freeze; tableName=wgEncodeCshlShortRnaSeqTransfragsProstateCellShort
      2010-06-23wgEncodeCshlShortRnaSeqRawDataProstateCellShort.fastq.gz  1.2G  2009-09-23  cell=prostate; dataType=ShortRnaSeq; rnaExtract=short; localization=cell; lab=Cshl; type=fastq; view=RawData; subId=535; grant=Gingeras; dataVersion=ENCODE Fall 2009 Freeze
    33 files