[DIR] Parent Directory

This directory contains data generated by the Wold/Caltech lab as part of the ENCODE project.

This directory contains the subset of the Caltech RNA-seq signal tracks used in the /cgi-bin/hgTrackUi?db=hg18&g=wgEncodeReg"> ENCODE Integrated Regulation Tracks

Further information is available in the /cgi-bin/hgTrackUi?db=hg18&g=wgEncodeCaltechRnaSeq"> ENCODE Caltech RNA-seq track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:
  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2009-12-06wgEncodeCaltechRnaSeqRawSignalRep1Gm12878CellLongpolyaBb12x75.wig.gz  140M  2009-03-06  dataType=RnaSeq; cell=GM12878; rnaExtract=longPolyA; localization=cell; replicate=1; subId=266; dataVersion=ENCODE Feb 2009 Freeze; grant=Myers; lab=Caltech; labVersion=erange3.0/bowtie0.981/blat34; mapAlgorithm=BB1; view=RawSignal; type=wig; tableName=wgEncodeCaltechRnaSeqRawSignalRep1Gm12878CellLongpolyaBb12x75; insertLength=200; readType=2x75
      2010-10-13wgEncodeCaltechRnaSeqRawSignalRep1H1hescCellPapBb2R2x75.wig.gz  221M  2010-01-13  dataType=RnaSeq; cell=H1-hESC; rnaExtract=longPolyA; localization=cell; replicate=1; subId=1026; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=Caltech; labVersion=ERANGE3.2.0alpha; mapAlgorithm=BB2; view=RawSignal; type=wig; tableName=wgEncodeCaltechRnaSeqRawSignalRep1H1hescCellPapBb2R2x75; insertLength=200; readType=2x75
      2010-10-12wgEncodeCaltechRnaSeqRawSignalRep1HuvecCellPapBb2R2x75.wig.gz  224M  2010-01-13  dataType=RnaSeq; cell=HUVEC; rnaExtract=longPolyA; localization=cell; replicate=1; subId=1006; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=Caltech; labVersion=ERANGE3.2.0alpha; mapAlgorithm=BB2; view=RawSignal; type=wig; tableName=wgEncodeCaltechRnaSeqRawSignalRep1HuvecCellPapBb2R2x75; insertLength=200; readType=2x75
      2010-10-22wgEncodeCaltechRnaSeqRawSignalRep2Hepg2CellPapBb2R2x75.wig.gz  247M  2010-01-22  dataType=RnaSeq; cell=HepG2; rnaExtract=longPolyA; localization=cell; replicate=2; subId=1093; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=Caltech; labVersion=ERANGE3.2.0alpha; mapAlgorithm=BB2; view=RawSignal; type=wig; tableName=wgEncodeCaltechRnaSeqRawSignalRep2Hepg2CellPapBb2R2x75; insertLength=200; readType=2x75
      2009-12-06wgEncodeCaltechRnaSeqRawSignalRep1K562CellLongpolyaBb12x75.wig.gz  122M  2009-03-06  dataType=RnaSeq; cell=K562; rnaExtract=longPolyA; localization=cell; replicate=1; subId=267; dataVersion=ENCODE Feb 2009 Freeze; grant=Myers; lab=Caltech; labVersion=erange3.0/bowtie0.981/blat34; mapAlgorithm=BB1; view=RawSignal; type=wig; tableName=wgEncodeCaltechRnaSeqRawSignalRep1K562CellLongpolyaBb12x75; insertLength=200; readType=2x75
      2010-10-12wgEncodeCaltechRnaSeqRawSignalRep1NhekCellPapBb2R2x75.wig.gz  250M  2010-01-13  dataType=RnaSeq; cell=NHEK; rnaExtract=longPolyA; localization=cell; replicate=1; subId=1010; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=Caltech; labVersion=ERANGE3.2.0alpha; mapAlgorithm=BB2; view=RawSignal; type=wig; tableName=wgEncodeCaltechRnaSeqRawSignalRep1NhekCellPapBb2R2x75; insertLength=200; readType=2x75
    6 files