[DIR] Parent Directory

This directory contains data generated by the Hubbard/Sanger lab as part of the ENCODE project. Further information is available in the /cgi-bin/hgTrackUi?db=hg18&g=wgEncodeSangerGencode"> Gencode Genes track description.

This track update contains data released by the Gencode group as Version 3c. Release notes are included in the track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:
  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2010-07-27wgEncodeGencodeAutoV3.gtf.gz  7.4M  2009-10-27  dataType=Gencode; expId=1878; labExpId=V3c; subId=453; dataVersion=ENCODE Sep 2009 Freeze; grant=Hubbard; lab=Sanger; type=genePred; annotation=Automatic; level=3
      2010-07-27wgEncodeGencodeManualV3.gtf.gz  12M  2009-10-27  dataType=Gencode; expId=1878; labExpId=V3c; subId=453; dataVersion=ENCODE Sep 2009 Freeze; grant=Hubbard; lab=Sanger; type=genePred; annotation=Manual; level=1-2
      2010-07-27wgEncodeGencodePolyaV3.gtf.gz  509K  2009-10-27  dataType=Gencode; expId=1878; labExpId=V3c; subId=453; dataVersion=ENCODE Sep 2009 Freeze; grant=Hubbard; lab=Sanger; type=genePred; annotation=Automatic; level=3
      2010-06-03wgEncodeGencodeClassesV3.tab.gz  1.5M  2009-09-03  dataType=Gencode; expId=1878; labExpId=V3c; subId=453; dataVersion=ENCODE September 2009 Freeze; grant=Hubbard; lab=Sanger; type=tab
    4 files